Killed the boss in Echos from the past and now the shuttle won't open and I'm stuck underground. There aren't any saves soon before that so I have to go back 3 hrs and loose like 4 levels in order to play the game.
That's really weird. I take it that the roof has opened up completely prior to your trying to board the prison ship? I remember that I couldn't interact with it until the roof had opened all the way after beating the Cataxi Queen.
Also, is there not autosave from the previous cell you can load?